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比利时vs摩洛哥足彩 ,
university of california san diego

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informal seminar on mathematics and biochemistry-biophysics

riccardo baron

ucsd \\ department of chemistry and biochemistry

water: active or passive player in cavity-ligand recognition & binding?

abstract:

we use a straightforward approach based on potential of mean force calculations from explicit solvent molecular dynamics simulations to derive complete thermodynamic signatures of cavity-ligand binding. using extensive sampling, free energy, enthalpy, and entropy estimates are obtained along the binding coordinate for a set of systems with varying cavity and ligand physicochemical properties, thus revealing an unprecedented, nanoscale picture of hydration thermodynamics. despite the simplicity of the model systems considered, a broad range of thermodynamic signatures is found in which water (rather then cavity or ligand) contributions appear to largely determine the overall system enthalpy-entropy compensation.

hosts: li-tien cheng and bo li

february 25, 2010

1:00 pm

ap&m 5829

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